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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21083072_21083829_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21083072 - 21083829
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
AAAACCTGAATA
Flanking Amino Acid:
AEDALYRSNKDGSFLVRNSS
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
80.7
0.69
0.8
74.1
36
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
57.4
0.23
1.4
62.29
37

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773
ENSAPLT00000039162
21081553 - 21176268
94716