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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21083914_21087021_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21083914 - 21087021
Intron Length:
3108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATTTTACAG
Flanking Amino Acid:
ISSISSTADQDAGVHSKAWF
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.1
40.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
31.9
-2.1
3.5
47.5
47.9
Minor BPS
46.7
-0.3
1.8
52.18
42.9

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773
ENSAPLT00000039162
21081553 - 21176268
94716