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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21089075_21089737_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21089075 - 21089737
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTGTAATC
Flanking Amino Acid:
PLPPLPSGAQKSLLQKASIL
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
72.3
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.4
0.71
0.9
78.7
38.8
Minor 5ss
40.9
-1
3
52.6
38.2
Minor BPS
60.7
0.32
2
73.34
38.7

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039162
21081553 - 21176268
94716
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773