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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21089817_21090583_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21089817 - 21090583
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCACACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGACTCTAATT
Flanking Amino Acid:
PSRDTSTLNEEKPTAAERRR
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69.8
0.45
0.9
61.7
33.2
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
59.5
0.38
1.7
77.17
39.7

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773
ENSAPLT00000039162
21081553 - 21176268
94716