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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21094741_21095029_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21094741 - 21095029
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CCTTTCTTAATT
Flanking Amino Acid:
EEKPSPSPATRFTKPLPNTP
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.8
0.54
1
67.8
42.6
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
76.9
0.92
1.2
82.74
39.5

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773
ENSAPLT00000039162
21081553 - 21176268
94716