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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21095649_21097080_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21095649 - 21097080
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGCTAACTAAAG
Flanking Amino Acid:
AKPSVTSDMQEVYEVPEEEE
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
71.3
0.48
0.8
65.3
30.6
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
41.8
-0.7
2.1
48.91
43.6

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039162
21081553 - 21176268
94716
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773