About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21098666_21099847_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21098666 - 21099847
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTATG
5'SS Class:
major
3'SS Sequence:
TCCACATTAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAATTTTGAATA
Flanking Amino Acid:
AFPISRGEYADNRTSHQQLP
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.6
41.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
56
0.14
1.1
56.4
36.8
Minor 5ss
38
-1.4
3.1
50.7
45.8
Minor BPS
59.6
0.3
1.3
65.79
34.4

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773
ENSAPLT00000039162
21081553 - 21176268
94716