Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21100685_21101459_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21100685 - 21101459

Intron Length:

775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCTTGGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

ATCTCCTTAAGT

Flanking Amino Acid:

PSLPRRDYASEHADNEEEQW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

73.9

0.59

30.2

Major PPT

69.5

0.44

0.9

68.4

37.4

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

75.3

0.87

1.6

86.17

Associated Gene:

Gene:

BLNK

Ensembl Gene ID:

ENSAPLG00000006563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019502

21081553 - 21176268

94716

ENSAPLT00000006837

21081553 - 21127325

45773

ENSAPLT00000039162

21081553 - 21176268

94716