About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21101510_21103450_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21101510 - 21103450
Intron Length:
1941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGCTAT
5'SS Class:
weak_major
3'SS Sequence:
TTATCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATAAATTTAATT
Flanking Amino Acid:
ICKTGKDTWDRLKKKPPPSL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
67.9
39.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.2
0.75
0.8
77.1
35.9
Minor 5ss
57.4
0.25
2.5
73.3
43.5
Minor BPS
59.7
0.38
1.5
73.15
37.5

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773