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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21101510_21109389_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21101510 - 21109389
Intron Length:
7880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTATCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATAAATTTAATT
Flanking Amino Acid:
NESGIINKFKKLKKKPPPSL
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.2
0.75
0.8
77.1
35.9
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
59.7
0.38
1.5
73.15
37.5

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039162
21081553 - 21176268
94716