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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21103508_21109389_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21103508 - 21109389
Intron Length:
5882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTGATATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
NESGIINKFKKFQNEQVALI
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.4
0.55
1
71.1
43.3
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019502
21081553 - 21176268
94716
ENSAPLT00000006837
21081553 - 21127325
45773