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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21109456_21127278_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21109456 - 21127278
Intron Length:
17823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TAATATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TGTTGTTTAATA
Flanking Amino Acid:
KLAVPAGEKLRKLQKMVHDI
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.4
37.4
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
77
0.61
0.9
70.3
40.4
Minor 5ss
30.8
-2.2
3.8
47.7
48
Minor BPS
66.3
0.51
1.7
75.58
36.3

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006837
21081553 - 21127325
45773