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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21146855_21171427_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21146855 - 21171427
Intron Length:
24573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTTTATTTAAAA
Flanking Amino Acid:
KLSMNGSHFLNLSDYELSRF
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
63.8
0.43
1.6
73.42
38.3

Associated Gene:

Gene:
BLNK
Ensembl Gene ID:
ENSAPLG00000006563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039162
21081553 - 21176268
94716
ENSAPLT00000019502
21081553 - 21176268
94716