Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21155193_21182019_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

21155193 - 21182019

Intron Length:

26827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTTGT

5'SS Class:

strong_major

3'SS Sequence:

ACTAATATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTCTCTCACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.9

80.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

71.8

0.49

66.9

42.9

Minor 5ss

-0.2

2.5

67.3

43.8

Minor BPS

62.9

0.49

2.1

88.42

36.8

Associated Gene:

Gene:

DNTT

Ensembl Gene ID:

ENSAPLG00000012429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012950

21155091 - 21293298

138208