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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21200293_21204352_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21200293 - 21204352
Intron Length:
4060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTCAATAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.9
81.6
34.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
61.6
0.44
1.9
82.17
38.1

Associated Gene:

Gene:
DNTT
Ensembl Gene ID:
ENSAPLG00000012429
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022244
21199991 - 21293298
93308
ENSAPLT00000040439
21182020 - 21290242
108223