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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21204433_21207806_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21204433 - 21207806
Intron Length:
3374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TATTTCTTGATA
Flanking Amino Acid:
SKGFRVESELSDSVTHIVAE
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
64.9
0.37
1
61
37.5
Major PPT
75.7
0.58
1
73.2
37
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
75.1
0.78
1
78.49
31.3

Associated Gene:

Gene:
DNTT
Ensembl Gene ID:
ENSAPLG00000012429
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039510
21203863 - 21293298
89436
ENSAPLT00000022244
21199991 - 21293298
93308
ENSAPLT00000018872
21203863 - 21290242
86380
ENSAPLT00000048374
21203863 - 21310629
106767
ENSAPLT00000012950
21155091 - 21293298
138208
ENSAPLT00000040439
21182020 - 21290242
108223