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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21214249_21224741_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21214249 - 21224741
Intron Length:
10493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTTTTGTATCC
Flanking Amino Acid:
TLNNCNKKFTDAFEIMAENY
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72
39.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
79.6
0.67
0.7
72.1
32.5
Minor 5ss
34.1
-1.8
3.3
49.3
46.4
Minor BPS
51.6
0.03
2.2
73.08
38.7

Associated Gene:

Gene:
DNTT
Ensembl Gene ID:
ENSAPLG00000012429
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022244
21199991 - 21293298
93308
ENSAPLT00000018872
21203863 - 21290242
86380
ENSAPLT00000048374
21203863 - 21310629
106767
ENSAPLT00000012950
21155091 - 21293298
138208
ENSAPLT00000040439
21182020 - 21290242
108223
ENSAPLT00000039510
21203863 - 21293298
89436