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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21224913_21226193_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21224913 - 21226193
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATAC
5'SS Class:
major
3'SS Sequence:
CTTATTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATTTTAAAA
Flanking Amino Acid:
MGDQVRDVIEEIIEDGESSR
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.1
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.5
0.62
0.9
77
37.1
Minor 5ss
43.8
-0.7
2.9
59
45.7
Minor BPS
61.4
0.35
1.4
68.66
37.7

Associated Gene:

Gene:
DNTT
Ensembl Gene ID:
ENSAPLG00000012429
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039510
21203863 - 21293298
89436
ENSAPLT00000022244
21199991 - 21293298
93308
ENSAPLT00000018872
21203863 - 21290242
86380
ENSAPLT00000048374
21203863 - 21310629
106767
ENSAPLT00000012950
21155091 - 21293298
138208
ENSAPLT00000040439
21182020 - 21290242
108223