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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21231005_21260084_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21231005 - 21260084
Intron Length:
29080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTACTT
Flanking Amino Acid:
ALVTITGGFRRGKKIGHDID
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
0.8
71.2
39.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
57.1
0.3
1.8
77.76
38.8

Associated Gene:

Gene:
DNTT
Ensembl Gene ID:
ENSAPLG00000012429
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039510
21203863 - 21293298
89436
ENSAPLT00000022244
21199991 - 21293298
93308
ENSAPLT00000018872
21203863 - 21290242
86380
ENSAPLT00000048374
21203863 - 21310629
106767
ENSAPLT00000012950
21155091 - 21293298
138208
ENSAPLT00000040439
21182020 - 21290242
108223