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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21372462_21372947_F

Intron Information:

Intron Rank:
137445
Intron Class:
major
Intron Phase:
Intron Coordinates:
21372462 - 21372947
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCTCCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
68.1
0.41
0.9
65.9
33.5
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
77.5
0.94
1.6
92.94
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024000
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043413
21372089 - 21377106
5018
ENSAPLT00000041264
21372089 - 21374237
2149