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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21373108_21374226_F

Intron Information:

Intron Rank:
137446
Intron Class:
major
Intron Phase:
Intron Coordinates:
21373108 - 21374226
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TATTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88
0.85
0.8
85.7
33.4
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
63.9
0.52
1.7
80.79
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024000
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041264
21372089 - 21374237
2149