About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21426963_21427415_F

Intron Information:

Intron Rank:
132777
Intron Class:
major
Intron Phase:
Intron Coordinates:
21426963 - 21427415
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGGA
5'SS Class:
major
3'SS Sequence:
ATTATCTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64
42.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.2
0.43
1.1
69
36.6
Minor 5ss
34.1
-1.8
3.6
47.1
48.3
Minor BPS
58
0.33
1.8
75.07
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020400
21426948 - 21457612
30665