About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21479371_21480883_R

Intron Information:

Intron Rank:
146992
Intron Class:
major
Intron Phase:
Intron Coordinates:
21479371 - 21480883
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTGG
5'SS Class:
major
3'SS Sequence:
TATCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
55.9
43.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
42.3
-0.9
3.1
56
48.2
Minor BPS
48.5
-0.1
2.1
70.11
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026385
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030823
21478613 - 21499935
21323