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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21481292_21499388_R

Intron Information:

Intron Rank:
146994
Intron Class:
major
Intron Phase:
Intron Coordinates:
21481292 - 21499388
Intron Length:
18097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GGTATGATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.6
0.89
0.7
85.1
27.9
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
45.7
-0.2
2.3
67.12
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026385
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030823
21478613 - 21499935
21323