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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21530148_21531644_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21530148 - 21531644
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
QDARVEALVSAPVLLITSDV
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
67
39.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
46.8
-0.3
2.4
54.4
43
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024228
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046895
21529291 - 21532122
2832
ENSAPLT00000039352
21529291 - 21532201
2911