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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21531752_21531894_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21531752 - 21531894
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AAAGTGTTAATT
Flanking Amino Acid:
VKKHPYRNHETAYTRENSLT
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79
0.65
0.9
73.7
35.9
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
47.9
-0
2.1
63.61
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024228
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046895
21529291 - 21532122
2832