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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21531752_21532099_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21531752 - 21532099
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CATCCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCCTTCTAAATC
Flanking Amino Acid:
VKKHPYRNHEVRSPQAIKLK
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.6
0.62
0.8
71.6
32.5
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
58.6
0.25
1.7
64.76
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024228
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039352
21529291 - 21532201
2911