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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_215515_215754_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
215515 - 215754
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCTCTGTCACT
Flanking Amino Acid:
QYISPRAGRGSFFDELLSHG
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
66.6
39.6
Major BPS
100
1.24
0.5
100
0
Major PPT
71.9
0.49
1
75.4
33.4
Minor 5ss
31.2
-2.1
3.3
41.1
45.6
Minor BPS
48.7
-0
2.4
73.4
44.1

Associated Gene:

Gene:
RNLS
Ensembl Gene ID:
ENSAPLG00000015666
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019703
215255 - 288812
73558
ENSAPLT00000017605
215255 - 239960
24706
ENSAPLT00000016323
215255 - 291441
76187
ENSAPLT00000042201
215255 - 291640
76386
ENSAPLT00000041320
215255 - 295535
80281