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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_215898_217068_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
215898 - 217068
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTTTTGAACC
Flanking Amino Acid:
SVVKYYLKQSGADVFYEYHV
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76
0.59
1
71.1
43.4
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
67
0.51
1.4
74.34
36.6

Associated Gene:

Gene:
RNLS
Ensembl Gene ID:
ENSAPLG00000015666
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019703
215255 - 288812
73558
ENSAPLT00000017605
215255 - 239960
24706
ENSAPLT00000016323
215255 - 291441
76187
ENSAPLT00000042201
215255 - 291640
76386
ENSAPLT00000041320
215255 - 295535
80281