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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21631713_21647501_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21631713 - 21647501
Intron Length:
15789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACATTTTCAACC
Flanking Amino Acid:
AVRATENKVLRCESISKGAH
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.7
0.53
1.1
71.5
43.2
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
55.8
0.16
1.5
61.18
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031541
21628146 - 21937128
308983