About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21647590_21650885_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21647590 - 21650885
Intron Length:
3296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGACCTTTATT
Flanking Amino Acid:
RKLVTTVKLSGLQKTVVPLH
Intron Amino Acid Position:
1252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.9
69
41.8
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
65.6
0.57
1.7
80.72
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000048411
21627187 - 21937128
309942