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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21671227_21704422_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21671227 - 21704422
Intron Length:
33196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAT
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TGTTCCTGACTC
Flanking Amino Acid:
QPSYPKQPLLSCWMAWEPSL
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.7
36.4
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
84.8
0.78
0.9
76.9
42.1
Minor 5ss
39.4
-1.2
3.3
56.4
48
Minor BPS
60.3
0.3
1.8
72.1
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012536
21670005 - 21937128
267124