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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21674575_21704422_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21674575 - 21704422
Intron Length:
29848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAT
5'SS Class:
major
3'SS Sequence:
TATCTCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TATCTCTCAACA
Flanking Amino Acid:
QPSYPKQPLLRFYLISGGVP
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.7
36.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
75
0.56
0.9
70.4
34.7
Minor 5ss
39.4
-1.2
3.3
56.4
48
Minor BPS
65.5
0.48
1.5
74.46
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000020421
21670005 - 21766745
96741
ENSAPLT00000048411
21627187 - 21937128
309942