About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21713924_21722947_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21713924 - 21722947
Intron Length:
9024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ACATGCCTAACA
Flanking Amino Acid:
THFNNFAVLMDFKTVLSFPQ
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
71.6
0.54
1
72
33.1
Major PPT
74.2
0.54
0.8
68.9
31.7
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
49.7
-0
2.1
63.39
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012536
21670005 - 21937128
267124
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000020421
21670005 - 21766745
96741