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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_217228_272065_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
217228 - 272065
Intron Length:
54838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
TTTTCTCCCACA
Flanking Amino Acid:
ILQLQGDIVNIINERQKQQL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.9
39.3
Major BPS
62
0.3
1.4
71.9
41
Major PPT
85.5
0.8
0.7
80.7
24.6
Minor 5ss
46
-0.4
2.8
63.9
41.4
Minor BPS
48.4
-0.1
2.2
72.2
40

Associated Gene:

Gene:
RNLS
Ensembl Gene ID:
ENSAPLG00000015666
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041320
215255 - 295535
80281
ENSAPLT00000019703
215255 - 288812
73558
ENSAPLT00000016323
215255 - 291441
76187
ENSAPLT00000042201
215255 - 291640
76386