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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21723157_21724105_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21723157 - 21724105
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATCTCTCTGATT
Flanking Amino Acid:
VATPAVFAKIDGCSFGNLTS
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
79
0.72
1
69
38.9
Major PPT
82.8
0.74
0.9
76.8
37.3
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
56.3
0.28
1.6
73.53
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012536
21670005 - 21937128
267124
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000020421
21670005 - 21766745
96741