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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21724314_21766685_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21724314 - 21766685
Intron Length:
42372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCGTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCATTTTAAAT
Flanking Amino Acid:
LCNTSKAITGNAVAVASVHL
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77
0.61
1
71.5
38.4
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
58.1
0.33
1.4
70.08
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020421
21670005 - 21766745
96741