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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21785753_21790333_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21785753 - 21790333
Intron Length:
4581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
TCTTTCTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TCTTTCTTGACA
Flanking Amino Acid:
LTSNIQVISKVSHNIALEAF
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
82.4
0.73
0.9
79.7
32.4
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
79
0.91
1.1
81.71
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000012536
21670005 - 21937128
267124
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124