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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21790496_21793785_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21790496 - 21793785
Intron Length:
3290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTGTTTTATCA
Flanking Amino Acid:
LIVFVDEVEDIGDALIEIAS
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.8
28.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84
0.76
0.9
82.3
34.2
Minor 5ss
42
-0.9
3.2
60.9
43.8
Minor BPS
61.3
0.35
1.7
74.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000012536
21670005 - 21937128
267124