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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21790496_21795224_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21790496 - 21795224
Intron Length:
4729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTGTTTTATCA
Flanking Amino Acid:
VTQVLHAFSQIGDALIEIAS
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84
0.76
0.9
82.3
34.2
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
61.3
0.35
1.7
74.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043481
21670005 - 21937128
267124