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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21795424_21798670_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21795424 - 21798670
Intron Length:
3247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
ERVINNKGDFRWPKTLAGIT
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.1
0.63
0.8
73.7
35.5
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000012536
21670005 - 21937128
267124