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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21798836_21810465_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21798836 - 21810465
Intron Length:
11630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTCAGTAATT
Flanking Amino Acid:
SIIHDCCLITRELILSSIDI
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
69.3
37.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.1
0.92
0.6
87.8
22.4
Minor 5ss
38.2
-1.3
3.5
55.6
48.7
Minor BPS
57.8
0.32
2.2
82.44
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000012536
21670005 - 21937128
267124