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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21810680_21825551_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21810680 - 21825551
Intron Length:
14872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
GCTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
RNLKENQLICAGPLELPLFE
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.5
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
77.1
31.6
Minor 5ss
40.3
-1.1
3.1
52.7
46.4
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012536
21670005 - 21937128
267124
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983