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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21825716_21826477_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21825716 - 21826477
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TATACGTACACC
Flanking Amino Acid:
LFSELLALKALHFNTDSLIC
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
81.5
0.71
0.8
73.8
36.8
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
42.5
-0.6
2.6
59.95
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000012536
21670005 - 21937128
267124