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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21840559_21892705_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21840559 - 21892705
Intron Length:
52147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGATAATTAATT
Flanking Amino Acid:
SFFGLRSLERLDLKNNLIST
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
70.8
34.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
33.5
-1.9
2.8
46.6
41.8
Minor BPS
59
0.36
1.8
76.41
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048411
21627187 - 21937128
309942
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000012536
21670005 - 21937128
267124