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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21892778_21936856_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21892778 - 21936856
Intron Length:
44079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TGACTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTTCTATTAACC
Flanking Amino Acid:
PAVLPNRTVSLILSNNKILW
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
64.8
40.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.4
0.55
0.9
66.3
40.5
Minor 5ss
33.5
-1.9
2.7
44.8
42.5
Minor BPS
64.3
0.43
1.6
73.91
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012029
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043481
21670005 - 21937128
267124
ENSAPLT00000031541
21628146 - 21937128
308983
ENSAPLT00000012536
21670005 - 21937128
267124
ENSAPLT00000048411
21627187 - 21937128
309942