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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21975450_21976954_R

Intron Information:

Intron Rank:
143280
Intron Class:
major
Intron Phase:
Intron Coordinates:
21975450 - 21976954
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
ATACTTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GATACTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.7
36.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.4
0.5
1
71.3
38.7
Minor 5ss
37
-1.5
2.9
45.2
38.1
Minor BPS
50.6
-0
1.7
60.83
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024401
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044556
21975183 - 21987455
12273
ENSAPLT00000024170
21975183 - 21981266
6084