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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22005375_22006237_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22005375 - 22006237
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATCAGAATT
Flanking Amino Acid:
QSSVPARICIGVTTVLTMTT
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
54.9
0.23
1.7
78.48
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012001
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012499
21999000 - 22032400
33401