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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22006391_22015974_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22006391 - 22015974
Intron Length:
9584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
GTACCTTCAAAA
Flanking Amino Acid:
TSVSEAVYETGRYPKLVFHF
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
80.5
0.69
0.8
75.1
33.3
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
50
-0
1.6
60.65
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012001
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012499
21999000 - 22032400
33401