About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22020618_22021263_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22020618 - 22021263
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
AATGTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCCCATTAATA
Flanking Amino Acid:
YPNGTVLYAIRITTTVACSM
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.1
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.7
0.4
1.1
64.6
45.2
Minor 5ss
45.9
-0.4
2.5
60.3
44.3
Minor BPS
61.1
0.35
1.6
68.6
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012001
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012499
21999000 - 22032400
33401